GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install gfinisher
and update with:
conda update gfinisher
A Docker container is available at https://quay.io/repository/biocontainers/gfinisher.