recipe gfviewer

A bioinformatics tool for visualizing the localization of multi-gene families across the genome of a given organism.

Homepage:

https://github.com/sakshar/GFViewer

License:

MIT

Recipe:

/gfviewer/meta.yaml

This tool is designed for processing genomic data, visualizing chromosomes, and localizing multi-gene families using Biopython and Matplotlib.

package gfviewer

(downloads) docker_gfviewer

versions:

1.0.4-0

depends biopython:

depends matplotlib-base:

depends openpyxl:

depends pandas:

depends pypdf2:

depends python:

>=3.8,<3.13

depends reportlab:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gfviewer

and update with::

   mamba update gfviewer

To create a new environment, run:

mamba create --name myenvname gfviewer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gfviewer:<tag>

(see `gfviewer/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gfviewer/README.html)