- recipe ghostz
GHOSTZ is a highly efficient remote homologue detection tool
GHOSTZ is a homology search tool which can detect remote homologues like BLAST and is about 200 times more efficient than BLAST by using database subsequence clustering. GHOSTZ outputs search results in the format similar to BLAST-tabular format.
- package ghostz¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install ghostz and update with:: mamba update ghostz
To create a new environment, run:
mamba create --name myenvname ghostz
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/ghostz:<tag> (see `ghostz/tags`_ for valid values for ``<tag>``)