recipe gimmemotifs

Motif prediction pipeline and various motif-related tools

Homepage

https://github.com/vanheeringen-lab/gimmemotifs

License

MIT

Recipe

/gimmemotifs/meta.yaml

Links

biotools: gimmemotifs

package gimmemotifs

(downloads) docker_gimmemotifs

Versions

0.13.1-2, 0.13.1-1, 0.13.1-0, 0.13.0-1, 0.13.0-0, 0.12.0-1, 0.12.0-0, 0.11.1-1, 0.11.1-0, 0.10.0-0, 0.10.0b6-1, 0.10.0b5-1, 0.10.0b4-1, 0.10.0b4-0, 0.10.0b1-0, 0.9.0.6-0, 0.9.0.5-0, 0.9.0.4-0, 0.9.0.3-2, 0.8.9.1-1

Depends bedtools

Depends diskcache

Depends feather-format

Depends future

Depends gadem

Depends genomepy

Depends ghostscript

Depends homer

Depends jinja2

Depends libgcc-ng

>=7.3.0

Depends matplotlib

>=2.0

Depends meme

Depends ncurses

>=6.1,<6.2.0a0

Depends numpy

Depends pillow

Depends pybedtools

Depends pysam

Depends python

>=3.6,<3.7.0a0

Depends python-xxhash

Depends pyyaml

>=3.10

Depends scikit-learn

>=0.18

Depends scipy

<1.3.0

Depends seaborn

Depends six

Depends sklearn-contrib-lightning

Depends statsmodels

Depends tqdm

Depends trawler

Depends ucsc-bigbedtobed

Depends ucsc-genepredtobed

Depends weeder

Depends xdg

Depends xgboost

>=0.71

Depends xxmotif

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gimmemotifs

and update with:

conda update gimmemotifs

or use the docker container:

docker pull quay.io/biocontainers/gimmemotifs:<tag>

(see gimmemotifs/tags for valid values for <tag>)