recipe gnali

gNALI (gene nonessentiality and loss-of-function identifier) is a tool for finding PLoF gene variants.

Homepage

https://github.com/phac-nml/gnali

License

APACHE / Apache-2.0

Recipe

/gnali/meta.yaml

package gnali

Versions

1.1.0-0,  1.0.5-1,  1.0.5-0,  1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0, 

1.1.0-0,  1.0.5-1,  1.0.5-0,  1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.1.1-0,  0.1.0-0

Depends

• ensembl-vep

• filelock

• git >=2

• htslib

• numpy

• pandas

• perl-bio-bigfile

• progress

• py-bgzip

• pybiomart

• pysam <0.16

• python >=3.6

• python-magic

• pyyaml

• samtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gnali

and update with:

conda update gnali

or use the docker container:

docker pull quay.io/biocontainers/gnali:<tag>

(see gnali/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gnali/README.html)