recipe gneiss

Compositional data analysis tools and visualizations

Homepage:

https://biocore.github.io/gneiss/

License:

BSD / BSD

Recipe:

/gneiss/meta.yaml

package gneiss

versions:

0.4.6-0,  0.4.5-0,  0.4.4-0

depends biom-format:

depends bokeh:

depends ipython:

>=3.2.0

depends matplotlib:

>=1.4.3

depends nose:

>=1.3.7

depends numpy:

>=1.9.2

depends pandas:

>=0.18.0

depends python:

>3

depends scikit-bio:

>=0.5.1

depends scipy:

>=0.15.1

depends seaborn:

depends statsmodels:

>=0.8.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gneiss

and update with::

   mamba update gneiss

To create a new environment, run:

mamba create --name myenvname gneiss

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gneiss:<tag>

(see `gneiss/tags`_ for valid values for ``<tag>``)

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Link to this page

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