recipe graftm

GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets

Homepage:

http://geronimp.github.io/graftM

License:

GPL3 / GPL3+

Recipe:

/graftm/meta.yaml

package graftm

Versions:

0.14.0-1,  0.14.0-0,  0.13.1-0,  0.12.2-0,  0.11.1-0,  0.10.1-1,  0.10.1-0

Depends:

• biom-format >=2.1.4

• biopython >=1.64

• bird_tool_utils_python

• dendropy >=4.1.0

• diamond >=0.9

• extern

• fastalite

• fasttree

• hmmer 3.2.1.*

• jinja2

• krona >=2.4

• mafft >=7.22

• mfqe >=0.5.0

• orfm >=0.2.0

• pplacer

• python

• python >3.7

• pyyaml

• taxtastic >=0.5.4

Required By:

• singlem

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install graftm

and update with:

conda update graftm

or use the docker container:

docker pull quay.io/biocontainers/graftm:<tag>

(see graftm/tags for valid values for <tag>)

Download stats

Link to this page

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