recipe graphbin

GraphBin: Refined binning of metagenomic contigs using assembly graphs

Homepage:

https://github.com/Vini2/GraphBin

Documentation:

https://graphbin.readthedocs.io/

License:

BSD-3

Recipe:

/graphbin/meta.yaml

Links:

doi: 10.1093/bioinformatics/btaa180

GraphBin is a metagenomic contig bin-refinement tool that makes use of assembly graphs.

package graphbin

Versions:

1.6.1-0,  1.5-0

Depends:

• biopython >=1.7.2

• cairocffi

• python >=3.7.1

• python-igraph >=0.7.21

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install graphbin

and update with:

conda update graphbin

or use the docker container:

docker pull quay.io/biocontainers/graphbin:<tag>

(see graphbin/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/graphbin/README.html)