- recipe grimer
GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard
- Homepage:
- License:
MIT / MIT License
- Recipe:
GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
- package grimer¶
-
- Versions:
1.0.0-1
,1.0.0-0
- Depends:
bioconductor-decontam
1.10.0
biom-format
>=2.1.10
bokeh
2.2.3
jinja2
3.0.3
multitax
1.1.1
python
>=3.5
r-base
>=4.0.0
r-optparse
1.6.6
scikit-bio
>=0.5.6
scipy
>=1.6.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install grimer
and update with:
conda update grimer
or use the docker container:
docker pull quay.io/biocontainers/grimer:<tag>
(see grimer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/grimer/README.html)