recipe grimer

GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard

Homepage:

https://github.com/pirovc/grimer

License:

MIT / MIT License

Recipe:

/grimer/meta.yaml

GRIMER perform analysis of microbiome data and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

package grimer

Versions:

1.0.0-1,  1.0.0-0

Depends:

• bioconductor-decontam 1.10.0

• biom-format >=2.1.10

• bokeh 2.2.3

• jinja2 3.0.3

• markdown

• multitax 1.1.1

• numpy

• pandas

• python >=3.5

• r-base >=4.0.0

• r-optparse 1.6.6

• scikit-bio >=0.5.6

• scipy >=1.6.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install grimer

and update with:

conda update grimer

or use the docker container:

docker pull quay.io/biocontainers/grimer:<tag>

(see grimer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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