recipe grz-common

Common library for grz applications

Homepage:

https://github.com/BfArM-MVH/grz-tools

License:

MIT

Recipe:

/grz-common/meta.yaml

package grz-common

versions:

0.1.0-0

depends boto3:

>=1.36,<2

depends click:

>=8.1.7,<9

depends grz-pydantic-models:

>=1.3.0

depends jsonschema:

>=4.23.0,<5

depends platformdirs:

>=4.3.6,<5

depends pydantic:

>=2.9.2,<2.10

depends pydantic-settings:

>=2.9.0,<2.10

depends pysam:

0.23.*

depends python:

>=3.12

depends python-crypt4gh:

>=1.7,<2

depends pyyaml:

>=6.0.2,<7

depends requests:

>=2.32.3,<3

depends rich:

13.*

depends tqdm:

>=4.66.5,<5

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install grz-common

and update with::

   mamba update grz-common

To create a new environment, run:

mamba create --name myenvname grz-common

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/grz-common:<tag>

(see `grz-common/tags`_ for valid values for ``<tag>``)

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