recipe gtdbtk

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Homepage

https://github.com/Ecogenomics/GTDBTk

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/gtdbtk/meta.yaml

Links

doi: 10.1093/bioinformatics/btz848

package gtdbtk

(downloads) docker_gtdbtk

Versions
1.3.0-11.3.0-01.2.0-11.2.0-01.1.1-01.1.0-01.0.2-31.0.2-21.0.2-1

1.3.0-11.3.0-01.2.0-11.2.0-01.1.1-01.1.0-01.0.2-31.0.2-21.0.2-11.0.2-01.0.1-11.0.1-01.0.0-00.3.3-00.3.2-20.3.2-10.3.2-00.3.1-00.3.0-10.3.0-00.2.2-00.1.6-00.1.5-00.1.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gtdbtk

and update with:

conda update gtdbtk

or use the docker container:

docker pull quay.io/biocontainers/gtdbtk:<tag>

(see gtdbtk/tags for valid values for <tag>)