recipe hafez

A tool for identifying active prophage elements through read mapping

Homepage

https://github.com/Chrisjrt/hafeZ

Documentation

https://github.com/Chrisjrt/hafeZ/blob/master/README.md

Developer docs

https://github.com/Chrisjrt/hafeZ/

License

GPL-3 / GPL-3

Recipe

/hafez/meta.yaml

package hafez

Versions

1.0.2-0

Depends

• bbmap >=38.90

• biopython >=1.78

• blast >=2.5.0

• hhsuite >=3.3.0

• hmmer >=3.3.2

• matplotlib-base >=3.3.4

• minimap2 >=2.18

• mosdepth >=0.3.1

• numpy >=1.20.1

• pandas >=1.2.4

• pyrodigal >=0.4.7

• pysam >=0.16.0.1

• python

• sambamba >=0.6.8

• samtools >=1.11

• scipy >=1.6.2

• seaborn >=0.11.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hafez

and update with:

conda update hafez

or use the docker container:

docker pull quay.io/biocontainers/hafez:<tag>

(see hafez/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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