Package Recipe 'hafez'

recipe hafez

A tool for identifying active prophage elements through read mapping

Homepage:: https://github.com/Chrisjrt/hafeZ
Documentation:: https://github.com/Chrisjrt/hafeZ/blob/master/README.md
Developer docs:: https://github.com/Chrisjrt/hafeZ/
License:: GPL-3 / GPL-3
Recipe:: /hafez/meta.yaml

package hafez¶

Versions:

1.0.3-0, 1.0.2-0

Depends:

bbmap >=38.90
biopython >=1.78
blast >=2.5.0
hhsuite >=3.3.0
hmmer >=3.3.2
matplotlib-base >=3.3.4
minimap2 >=2.18
mosdepth >=0.3.1
numpy >=1.20.1
pandas >=1.2.4
pyrodigal >=0.4.7
pysam >=0.16.0.1
python
sambamba >=0.6.8
samtools >=1.11
scipy >=1.6.2
seaborn >=0.11.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hafez

and update with:

conda update hafez

or use the docker container:

docker pull quay.io/biocontainers/hafez:<tag>

(see hafez/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hafez/README.html)