recipe hal2vg

A tool for converting from hal to vg format, as well as other tools generally useful for cactus.

Homepage:

https://github.com/ComparativeGenomicsToolkit/hal2vg

Documentation:

https://github.com/ComparativeGenomicsToolkit/hal2vg/blob/v1.1.8/README.md

License:

MIT / MIT

Recipe:

/hal2vg/meta.yaml

package hal2vg

(downloads) docker_hal2vg

versions:

1.1.8-0

depends _openmp_mutex:

>=4.5

depends hdf5:

>=1.14.3,<1.14.4.0a0

depends jansson:

>=2.14.1,<3.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hal2vg

and update with::

   mamba update hal2vg

To create a new environment, run:

mamba create --name myenvname hal2vg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hal2vg:<tag>

(see `hal2vg/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hal2vg/README.html)