recipe hamip

HaMiP is A scalable, accurate, and efficient solution for hydroxymethylation analysis of CMS-IP data.

Homepage

https://github.com/lijinbio/HaMiP

License

MIT / License :: OSI Approved :: MIT

Recipe

/hamip/meta.yaml

package hamip

Versions

0.0.3.2-0

Depends

• bedtools

• bioconductor-deseq2

• bioconductor-genefilter

• gawk

• matplotlib-base

• moabs

• pandas

• python >=3

• pyyaml

• r-base >=4

• r-desctools

• ucsc-fetchchromsizes

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hamip

and update with:

conda update hamip

or use the docker container:

docker pull quay.io/biocontainers/hamip:<tag>

(see hamip/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hamip/README.html)