recipe hapcut2

Tools for haplotype assembly from sequence data

Homepage:

https://github.com/vibansal/HapCUT2/

License:

BSD / BSD-2-Clause

Recipe:

/hapcut2/meta.yaml

package hapcut2

versions:

1.3.4-1,  1.3.4-0,  1.3.3-5,  1.3.3-4,  1.3.3-3,  1.3.3-2,  1.3.3-1,  1.3.3-0,  1.3.2-1, 

1.3.4-1,  1.3.4-0,  1.3.3-5,  1.3.3-4,  1.3.3-3,  1.3.3-2,  1.3.3-1,  1.3.3-0,  1.3.2-1,  1.3.2-0,  1.2-1,  1.2-0,  1.1-0

depends htslib:

>=1.21,<1.23.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libzlib:

>=1.3.1,<2.0a0

depends pysam:

depends python:

>=3.5

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hapcut2

and update with::

   mamba update hapcut2

To create a new environment, run:

mamba create --name myenvname hapcut2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hapcut2:<tag>

(see `hapcut2/tags`_ for valid values for ``<tag>``)

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