recipe haphic

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

Homepage:

https://github.com/zengxiaofei/HapHiC

License:

BSD 3-Clause License

Recipe:

/haphic/meta.yaml

package haphic

versions:

1.0.7-0

depends matplotlib-base:

depends mkl:

depends networkx:

depends numpy:

<2.0.0

depends portion:

depends pysam:

depends python:

>=3.12

depends scikit-learn:

depends scipy:

depends sparse_dot_mkl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install haphic

and update with::

   mamba update haphic

To create a new environment, run:

mamba create --name myenvname haphic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/haphic:<tag>

(see `haphic/tags`_ for valid values for ``<tag>``)

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