recipe haploclique/1.3.1

Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.



GPL3 / GPLv3+



package haploclique

(downloads) docker_haploclique



depends boost:


depends bzip2:


depends libstdcxx-ng:


depends zlib:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install haploclique

and update with::

   mamba update haploclique

To create a new environment, run:

mamba create --name myenvname haploclique

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `haploclique/tags`_ for valid values for ``<tag>``)

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