recipe haploconduct

HaploConduct is a package designed for reconstruction of individual haplotypes from next generation sequencing data, in particular Illumina. It provides two methods, SAVAGE and POLYTE, which can be run through the haploconduct wrapper.

Homepage

https://github.com/HaploConduct/HaploConduct

License

GPL3

Recipe

/haploconduct/meta.yaml

package haploconduct

Versions

0.2.1-1,  0.2.1-0

Depends

• boost-cpp >=1.70.0,<1.70.1.0a0

• bwa

• kallisto >=0.43.0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• rust-overlaps

• samtools >=1.4

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install haploconduct

and update with:

conda update haploconduct

or use the docker container:

docker pull quay.io/biocontainers/haploconduct:<tag>

(see haploconduct/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/haploconduct/README.html)