- recipe haploconduct
HaploConduct is a package designed for reconstruction of individual haplotypes from next generation sequencing data, in particular Illumina. It provides two methods, SAVAGE and POLYTE, which can be run through the haploconduct wrapper.
- Homepage:
- License:
GPL3
- Recipe:
- package haploconduct¶
-
- Versions:
0.2.1-3
,0.2.1-2
,0.2.1-1
,0.2.1-0
- Depends:
boost-cpp
>=1.74.0,<1.74.1.0a0
kallisto
>=0.43.0
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
python
>=2.7,<2.8.0a0
python_abi
2.7.* *_cp27mu
samtools
>=1.4
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install haploconduct
and update with:
conda update haploconduct
or use the docker container:
docker pull quay.io/biocontainers/haploconduct:<tag>
(see haploconduct/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/haploconduct/README.html)