recipe haploconduct

HaploConduct is a package designed for reconstruction of individual haplotypes from next generation sequencing data, in particular Illumina. It provides two methods, SAVAGE and POLYTE, which can be run through the haploconduct wrapper.

Homepage:

https://github.com/HaploConduct/HaploConduct

License:

GPL3

Recipe:

/haploconduct/meta.yaml

package haploconduct

Versions:

0.2.1-3,  0.2.1-2,  0.2.1-1,  0.2.1-0

Depends:

• boost-cpp >=1.74.0,<1.74.1.0a0

• bwa

• kallisto >=0.43.0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• rust-overlaps

• samtools >=1.4

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install haploconduct

and update with:

conda update haploconduct

or use the docker container:

docker pull quay.io/biocontainers/haploconduct:<tag>

(see haploconduct/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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