recipe haplotype-lso

Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data

Homepage:

https://github.com/holtgrewe/haplotype-lso

License:

MIT / MIT

Recipe:

/haplotype-lso/meta.yaml

package haplotype-lso

versions:

0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.4-0, 

0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0

depends attrs:

depends bioconvert:

depends biopython:

>=1.75

depends blast:

depends dash:

>=1.0

depends dash-bootstrap-components:

depends dash-core-components:

depends dash-html-components:

depends dash-renderer:

depends dash-table:

depends flask:

depends logzero:

depends matplotlib-base:

depends numpy:

depends pandas:

depends plotly:

depends python:

depends scipy:

depends seqtk:

depends xlsxwriter:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install haplotype-lso

and update with::

   mamba update haplotype-lso

To create a new environment, run:

mamba create --name myenvname haplotype-lso

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/haplotype-lso:<tag>

(see `haplotype-lso/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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