recipe hapsolo

An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.

Homepage:

https://github.com/esolares/HapSolo

License:

GPL / GPL-2.0

Recipe:

/hapsolo/meta.yaml

package hapsolo

Versions:

2021.10.09-0

Depends:

• augustus

• blast

• blat >=36

• braker

• busco 3.0.*

• matplotlib-base <3

• minimap2

• mummer

• pandas

• parallel

• python 2.7.*

• quast

• ucsc-fatotwobit

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hapsolo

and update with:

conda update hapsolo

or use the docker container:

docker pull quay.io/biocontainers/hapsolo:<tag>

(see hapsolo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hapsolo/README.html)