recipe haslr

A fast tool for hybrid genome assembly of long and short reads

Homepage:

https://github.com/vpc-ccg/haslr

License:

GPL3

Recipe:

/haslr/meta.yaml

package haslr

Versions:

0.8a1-4,  0.8a1-3,  0.8a1-2,  0.8a1-1,  0.8a1-0

Depends:

• fastutils >=0.2

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• minia >=3.2.1

• minimap2 >=2.17

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install haslr

and update with:

conda update haslr

or use the docker container:

docker pull quay.io/biocontainers/haslr:<tag>

(see haslr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/haslr/README.html)