recipe hatchet

Holistic Allele-specific Tumor Copy-number Heterogeneity

Homepage

https://github.com/raphael-group/hatchet

License

BSD-3

Recipe

/hatchet/meta.yaml

HATCHet is an algorithm to infer allele and clone-specific copy-number aberrations (CNAs), clone proportions, and whole-genome duplications (WGD) for several tumor clones jointly from multiple bulk-tumor samples of the same patient or from a single bulk-tumor sample.

package hatchet

(downloads) docker_hatchet

Versions
0.4.14-00.4.12-10.4.12-00.4.11-00.4.10-00.4.9-00.4.7-00.4.6-00.4.5-0

0.4.14-00.4.12-10.4.12-00.4.11-00.4.10-00.4.9-00.4.7-00.4.6-00.4.5-00.4.4-00.4.3-00.4.2-00.4.1-00.3.3-00.3.2-00.3.1-00.3.0-00.2.11-00.2.10-00.2.9-30.2.9-10.2.9-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hatchet

and update with:

conda update hatchet

or use the docker container:

docker pull quay.io/biocontainers/hatchet:<tag>

(see hatchet/tags for valid values for <tag>)

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