recipe heatcluster

A Python tool for visualizing SNP matrices with hierarchical clustering

Homepage:

https://github.com/DrB-S/heatcluster

Developer docs:

https://github.com/erinyoung/heatcluster

License:

GPL-3.0-only

Recipe:

/heatcluster/meta.yaml

package heatcluster

(downloads) docker_heatcluster

versions:

1.3.0-0

depends biopython:

depends fastcluster:

depends matplotlib-base:

>=3.4.0

depends numpy:

>=1.20.0

depends pandas:

>=1.3.0

depends python:

>=3.8

depends scikit-learn:

depends scipy:

>=1.7.0

depends seaborn:

>=0.11.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install heatcluster

and update with::

   mamba update heatcluster

To create a new environment, run:

mamba create --name myenvname heatcluster

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/heatcluster:<tag>

(see `heatcluster/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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