hisat2

downloads

graph-based alignment of next generation sequencing reads to a population of genomes

Home https://ccb.jhu.edu/software/hisat2/index.shtml
Versions 2.0.0beta, 2.0.1beta, 2.0.2beta, 2.0.3beta, 2.0.4, 2.0.5
License GPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/hisat2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hisat2

and update with:

conda update hisat2

docker

A Docker container is available at https://quay.io/repository/biocontainers/hisat2.