recipe hitac

A hierarchical taxonomic classifier for fungal ITS sequences

Homepage:

https://github.com/mirand863/hitac

License:

BSD / BSD-3-Clause

Recipe:

/hitac/meta.yaml

Links:

biotools: hitac

HiTaC is a software for hierarchical taxonomic classification for fungal ITS sequences. It is pure python code compatible with Python 3.8+ and requires hiclass, numpy, pandas, scikit-bio and scikit-learn.

package hitac

Versions:

2.0.23-0,  2.0.22-0,  2.0.21-1,  2.0.21-0,  2.0.20-1,  2.0.20-0,  2.0.19-0,  2.0.16-0,  2.0.15-0, 

2.0.23-0,  2.0.22-0,  2.0.21-1,  2.0.21-0,  2.0.20-1,  2.0.20-0,  2.0.19-0,  2.0.16-0,  2.0.15-0,  2.0.10-1,  2.0.10-0,  2.0.9-1,  2.0.9-0,  2.0.8-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  1.5.9-0,  1.5.8-0,  1.5.4-0,  1.5.1-0,  1.4-0,  1.3-0,  1.1-0

Depends:

• hiclass 4.1.7

• numpy >=1.22.3

• pandas >=1.4.3

• python >=3.7

• scikit-bio >=0.5

• scikit-learn >=0.24

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hitac

and update with:

conda update hitac

or use the docker container:

docker pull quay.io/biocontainers/hitac:<tag>

(see hitac/tags for valid values for <tag>)

Download stats

Link to this page

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