recipe hmftools-sage

SAGE is a somatic SNV, MNV and small INDEL caller optimised to call narrow regions of the genome with high prior chance of a variant with very high sensitivity.

Homepage:

https://github.com/hartwigmedical/hmftools/tree/master/sage

License:

GPL / GPL-3.0-only

Recipe:

/hmftools-sage/meta.yaml

package hmftools-sage

Versions:

3.2.3-0,  3.1-0,  3.0.3-0,  3.0.2-0,  3.0.1-0,  2.8-1,  2.8-0,  2.7-1,  2.7-0, 

3.2.3-0,  3.1-0,  3.0.3-0,  3.0.2-0,  3.0.1-0,  2.8-1,  2.8-0,  2.7-1,  2.7-0,  2.6-0,  2.5-0,  2.4-0,  2.3-0,  2.2-2,  2.2-1,  2.2-0,  1.0-0

Depends:

• bioconductor-genomicranges

• bioconductor-variantannotation

• font-ttf-dejavu

• openjdk >=8

• r-dplyr

• r-ggplot2

• r-tidyr

• xorg-libxt

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hmftools-sage

and update with:

conda update hmftools-sage

or use the docker container:

docker pull quay.io/biocontainers/hmftools-sage:<tag>

(see hmftools-sage/tags for valid values for <tag>)

Download stats

Link to this page

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