recipe homoeditdistance

An implementation of the homo-edit distance algorithm.

Homepage

https://github.com/AlBi-HHU/homo-edit-distance

License

MIT

Recipe

/homoeditdistance/meta.yaml

A homo-insertion is an insertion of a string of equal characters, which we also call a block, into another string. A homo-deletion is the inverse operation, that is, the deletion of such a block. We consider the following problem: Given two strings, what is the minimum number of homo-insertions or homo-deletions needed to convert one into the other? We refer to this number as the homo-edit distance.

package homoeditdistance

(downloads) docker_homoeditdistance

Versions

0.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install homoeditdistance

and update with:

conda update homoeditdistance

or use the docker container:

docker pull quay.io/biocontainers/homoeditdistance:<tag>

(see homoeditdistance/tags for valid values for <tag>)