recipe hopla

Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file

Homepage:

https://github.com/CenterForMedicalGeneticsGhent/Hopla

License:

MIT

Recipe:

/hopla/meta.yaml

package hopla

Versions:

1.2.0-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.0-0,  0.3.4-0,  0.3.3-0,  0.3.1-0, 

1.2.0-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.0-0,  0.3.4-0,  0.3.3-0,  0.3.1-0,  0.2.2-0,  0.2.1-0,  0.1.4-0,  0.1.3-0,  0.1.2-1,  0.1.2-0,  0.1.1-1,  0.1.1-0,  0.1.0-0

Depends:

• bioconductor-dnacopy >=1.64.0

• bioconductor-genomicranges >=1.42.0

• merlin 1.1.2.*

• pandoc >=2.*

• r-base

• r-data.table >=1.13.2

• r-htmltools >=0.5.0

• r-kinship2 >=1.8.5

• r-knitr >=1.29

• r-plotly >=4.9.2.1

• r-rcolorbrewer >=1.1_2

• r-vcfr >=1.8.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hopla

and update with:

conda update hopla

or use the docker container:

docker pull quay.io/biocontainers/hopla:<tag>

(see hopla/tags for valid values for <tag>)

Download stats

Link to this page

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