recipe hotspot3d

This 3D proximity tool can be used to identify mutation hotspots from linear protein sequence and correlate the hotspots with known or potentially interacting domains, mutations, or drugs. Mutation-mutation and mutation-drug clusters can also be identified and viewed.

Homepage:

https://github.com/ding-lab/hotspot3d

License:

GPL / GPLv3

Recipe:

/hotspot3d/meta.yaml

package hotspot3d

versions:

1.8.2-3,  1.8.2-2,  1.8.2-1,  1.8.2-0,  0.6.0-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-archive-extract:

depends perl-json:

depends perl-list-moreutils:

depends perl-lwp-simple:

>=6.39

depends perl-parallel-forkmanager:

depends perl-test-most:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hotspot3d

and update with::

   mamba update hotspot3d

To create a new environment, run:

mamba create --name myenvname hotspot3d

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hotspot3d:<tag>

(see `hotspot3d/tags`_ for valid values for ``<tag>``)

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