recipe htstream

HTStream is a quality control and processing pipeline for High Throughput Sequencing data. The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application. This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.

Homepage

https://s4hts.github.io/HTStream/

License

Apache / Apache 2.0

Recipe

/htstream/meta.yaml

package htstream

(downloads) docker_htstream

Versions

1.3.2-01.3.1-01.2.0-01.1.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install htstream

and update with:

conda update htstream

or use the docker container:

docker pull quay.io/biocontainers/htstream:<tag>

(see htstream/tags for valid values for <tag>)