recipe hymet2

HYMET (Hybrid Metagenomic Tool) for taxonomic identification of metagenomic sequences.

Homepage:

https://github.com/inesbmartins02/HYMET2

License:

MIT / MIT

Recipe:

/hymet2/meta.yaml

HYMET is a taxonomic identification tool designed for metagenomic sequence analysis. It uses a combination of tools including Mash, Mashmap, Minimap2, and custom classification algorithms to identify the taxonomic origin of metagenomic sequences with high accuracy.

package hymet2

(downloads) docker_hymet2

versions:

1.0.0-0

depends biopython:

depends csvkit:

depends mash:

depends mashmap:

depends minimap2:

depends numpy:

depends pandas:

depends perl:

depends python:

>=3.8

depends tqdm:

depends wget:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hymet2

and update with::

   mamba update hymet2

To create a new environment, run:

mamba create --name myenvname hymet2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hymet2:<tag>

(see `hymet2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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