recipe hyphy

An open-source software package for comparative sequence analysis using stochastic evolutionary models.

Homepage:

http://hyphy.org/

Developer docs:

https://github.com/veg/hyphy

License:

MIT / MIT

Recipe:

/hyphy/meta.yaml

HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences (in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning.

package hyphy

Versions:

2.5.50-2,  2.5.50-1,  2.5.50-0,  2.5.49-0,  2.5.48-0,  2.5.47-0,  2.5.46-0,  2.5.42-0,  2.5.41-1, 

2.5.50-2,  2.5.50-1,  2.5.50-0,  2.5.49-0,  2.5.48-0,  2.5.47-0,  2.5.46-0,  2.5.42-0,  2.5.41-1,  2.5.41-0,  2.5.40-1,  2.5.40-0,  2.5.39-0,  2.5.38-0,  2.5.36-1,  2.5.36-0,  2.5.33-0,  2.5.32-0,  2.5.31-0,  2.5.30-1,  2.5.30-0,  2.5.29-1,  2.5.29-0,  2.5.28-0,  2.5.26-0,  2.5.25-0,  2.5.24-0,  2.5.23-0,  2.5.22.1-0,  2.5.22-0,  2.5.21-0,  2.5.20-0,  2.5.19-0,  2.5.17-0,  2.5.16-0,  2.5.15-0,  2.5.14-0,  2.5.12-1,  2.5.12-0,  2.5.11-0,  2.5.10-0,  2.5.9-0,  2.5.8-1,  2.5.8-0,  2.5.7-0,  2.5.6-0,  2.5.5-0,  2.5.4-1,  2.5.4-0,  2.5.3-0,  2.5.2-1,  2.5.2-0,  2.5.1-1,  2.5.1-0,  2.5.0-1,  2.5.0-0,  2.3.14-1,  2.3.14-0,  2.3.12-1,  2.3.12-0,  2.3.11-2,  2.3.11-1,  2.3.11-0

Depends:

• _openmp_mutex >=4.5

• libcurl >=8.0.1,<9.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• openmpi >=4.1.5,<5.0a0

• openssl >=3.1.0,<4.0a0

Required By:

• zol

• phame

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hyphy

and update with:

conda update hyphy

or use the docker container:

docker pull quay.io/biocontainers/hyphy:<tag>

(see hyphy/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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