recipe hypo

Super Fast and Accurate Polisher for Long Read Genome Assemblies.

Homepage:

https://github.com/kensung-lab/hypo

License:

GPL-3.0

Recipe:

/hypo/meta.yaml

package hypo

(downloads) docker_hypo

versions:

1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends htslib:

>=1.12,<1.23.0a0

depends kmc:

>=3.0

depends libgcc-ng:

>=9.3.0

depends libstdcxx-ng:

>=9.3.0

depends openmp:

depends sdsl-lite:

>=2.1.1

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hypo

and update with::

   mamba update hypo

To create a new environment, run:

mamba create --name myenvname hypo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hypo:<tag>

(see `hypo/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hypo/README.html)