recipe icescreen

ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes.

Homepage

https://forgemia.inra.fr/ices_imes_analysis/icescreen

Documentation

icescreen.migale.inrae.fr

License

AGPL / AGPL-3.0-or-later

Recipe

/icescreen/meta.yaml

package icescreen

Versions

1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends

• bcbio-gff >=0.6.6

• biopython >=1.78

• blast 2.12.*

• hmmer 3.3.2.*

• pandas >=1.4.1

• python >=3.8

• snakemake-minimal >=6.0.5

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install icescreen

and update with:

conda update icescreen

or use the docker container:

docker pull quay.io/biocontainers/icescreen:<tag>

(see icescreen/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/icescreen/README.html)