Package Recipe 'icescreen'

recipe icescreen

ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes.

Homepage:: https://forgemia.inra.fr/ices_imes_analysis/icescreen
Documentation:: icescreen.migale.inrae.fr
License:: AGPL / AGPL-3.0-or-later
Recipe:: /icescreen/meta.yaml

package icescreen¶

Versions:

1.1.0-0, 1.0.4-1, 1.0.4-0, 1.0.3-1, 1.0.3-0, 1.0.2-0, 1.0.1-0, 1.0.0-0

Depends:

bcbio-gff >=0.6.9
biopython >=1.80
blast 2.12.*
hmmer 3.3.2.*
pandas >=1.5.2
python >=3.9
snakemake-minimal >=7.18.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install icescreen

and update with:

conda update icescreen

or use the docker container:

docker pull quay.io/biocontainers/icescreen:<tag>

(see icescreen/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/icescreen/README.html)