recipe icount

Computational pipeline for analysis of iCLIP data

Homepage

https://github.com/tomazc/iCount

License

MIT / MIT

Recipe

/icount/meta.yaml

iCount is a Python module and associated command-line interface (CLI), which provides all the commands needed to process iCLIP data on protein-RNA interactions.

package icount

(downloads) docker_icount

Versions

2.0.0-0

Depends bedtools

>=2.26.0

Depends cutadapt

>=1.10

Depends matplotlib

Depends numpy

Depends numpydoc

Depends pandas

Depends pybedtools

Depends pysam

Depends python

>=3.5,<3.6.0a0

Depends sphinx

>=1.4

Depends star

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install icount

and update with:

conda update icount

or use the docker container:

docker pull quay.io/biocontainers/icount:<tag>

(see icount/tags for valid values for <tag>)