recipe imfusion/0.3.0

IM-Fusion - Tool for identifying transposon insertions and their effects from RNA-sequencing data

Homepage

https://github.com/jrderuiter/imfusion

License

MIT

Recipe

/imfusion/0.3.0/meta.yaml

package imfusion

Versions

0.3.2-0, 0.3.0-0

Depends

• bowtie

• future

• htseq >=0.7.2

• htslib <1.4

• intervaltree

• intervaltree

• matplotlib

• numexpr

• pandas

• pathlib2

• pyfaidx >=0.4.8.1

• pysam >=0.9.1

• python 2.7*

• scipy

• seaborn

• seaborn

• star

• stringtie

• subread

• toolz

• tophat >=2.1.0

• typing

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install imfusion

and update with:

conda update imfusion

or use the docker container:

docker pull quay.io/biocontainers/imfusion:<tag>

(see imfusion/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/imfusion/README.html)