recipe immuneml

immuneML is a software platform for machine learning analysis of immune receptor repertoires.

Homepage:

https://github.com/uio-bmi/immuneML

Documentation:

https://docs.immuneml.uio.no/

License:

AGPL / APGL-3.0-only

Recipe:

/immuneml/meta.yaml

package immuneml

Versions:

2.2.5-0,  2.2.4-1,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.0-0,  2.1.2-2,  2.1.2-1,  2.1.2-0, 

2.2.5-0,  2.2.4-1,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.0-0,  2.1.2-2,  2.1.2-1,  2.1.2-0,  2.1.1-1,  2.1.1-0,  2.1.0-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0.0-0,  1.2.5-0,  1.2.4-0,  1.2.0-0,  1.1.4-0,  1.1.3-1,  1.1.3-0

Depends:

• airr >=1

• cython

• dill >=0.3

• editdistance 0.5.3

• fishersapi

• gensim >=3.8,<4

• h5py >=2.9.0

• libgcc-ng >=12

• logomaker >=0.8

• matplotlib-base >=3.1

• matplotlib-venn >=0.11

• numpy >=1.18

• pandas >=1

• plotly >=4

• pystache 0.5.4

• pytest >=4

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• pytorch >=1.5.1

• pyyaml >=5.3

• regex

• requests >=2.21

• scikit-learn >=0.23

• scipy

• tensorboard >=1.14.0

• tqdm >=0.24

• tzlocal

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install immuneml

and update with:

conda update immuneml

or use the docker container:

docker pull quay.io/biocontainers/immuneml:<tag>

(see immuneml/tags for valid values for <tag>)

Download stats

Link to this page

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