recipe intarna

Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites

Homepage

https://github.com/BackofenLab/IntaRNA

License

MIT

Recipe

/intarna/meta.yaml

Links

biotools: intarna, doi: 10.1093/nar/gkx279, doi: 10.1093/bioinformatics/btn544, doi: 10.1093/nar/gky329

package intarna

(downloads) docker_intarna

Versions

3.0.0-0, 2.4.1-0, 2.3.1-2, 2.3.1-1, 2.3.1-0, 2.3.0-0, 2.2.1-0, 2.2.0-3, 2.2.0-2, 2.2.0-1, 2.1.0-2, 2.1.0-1, 2.1.0-0, 2.0.5-0, 2.0.4-1, 2.0.3-1, 2.0.3-0, 2.0.2-0, 2.0.1-1, 2.0.1-0, 2.0.0-0, 1.2.5-2, 1.2.5-1

Depends

  • boost-cpp >=1.70.0,<1.70.1.0a0

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • perl >=5.26.2,<5.26.3.0a0

  • viennarna >=2.4.13,<2.5.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install intarna

and update with:

conda update intarna

or use the docker container:

docker pull quay.io/biocontainers/intarna:<tag>

(see intarna/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/intarna/README.html)