recipe integron_finder

Finds integrons in DNA sequences

Homepage

https://github.com/gem-pasteur/Integron_Finder

License

GPLv3

Recipe

/integron_finder/meta.yaml

package integron_finder

Versions

2.0rc6-0

Depends

• biopython >=1.70

• colorlog

• hmmer >=3.1

• infernal >=1.1.2

• matplotlib-base

• numpy >=1.14.2

• pandas >=0.22.0

• prodigal >=2.6.2

• python >=3.4

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install integron_finder

and update with:

conda update integron_finder

or use the docker container:

docker pull quay.io/biocontainers/integron_finder:<tag>

(see integron_finder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/integron_finder/README.html)