recipe integron_finder

Finds integrons in DNA sequences

Homepage

https://github.com/gem-pasteur/Integron_Finder

License

GPLv3

Recipe

/integron_finder/meta.yaml

package integron_finder

Versions

2.0.2-0,  2.0.1-0,  2.0-0,  2.0rc6-0

Depends

• biopython 1.78

• colorlog <=6.6.0

• hmmer >=3.1b2,<=3.3.2

• infernal >=1.1.2,<=1.1.4

• matplotlib-base 3.3.3

• numpy 1.19.4

• pandas 1.1.5

• prodigal >=2.6.3

• python >=3.7,<=3.10

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install integron_finder

and update with:

conda update integron_finder

or use the docker container:

docker pull quay.io/biocontainers/integron_finder:<tag>

(see integron_finder/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/integron_finder/README.html)