recipe iqtree

Efficient phylogenomic software by maximum likelihood.

Homepage:

http://www.iqtree.org/

Developer docs:

https://github.com/iqtree/iqtree2

License:

GPL-2.0-or-later

Recipe:

/iqtree/meta.yaml

Links:

biotools: iq-tree, doi: 10.1093/molbev/msu300, usegalaxy-eu: iqtree

package iqtree

Versions:

2.2.2.3-2,  2.2.2.3-1,  2.2.2.3-0,  2.2.0.3-1,  2.2.0.3-0,  2.2.0_beta-1,  2.2.0_beta-0,  2.1.4_beta-0,  2.1.2-0, 

2.2.2.3-2,  2.2.2.3-1,  2.2.2.3-0,  2.2.0.3-1,  2.2.0.3-0,  2.2.0_beta-1,  2.2.0_beta-0,  2.1.4_beta-0,  2.1.2-0,  2.0.3-1,  2.0.3-0,  1.6.12-1,  1.6.12-0,  1.6.11.1-0,  1.6.11-0,  1.6.10-0,  1.6.9-1,  1.6.9-0,  1.6.8-0,  1.6.7.2-0,  1.6.7.1-0,  1.6.7-1,  1.6.7-0,  1.6.6-0,  1.5.5-2,  1.5.5-1,  1.5.5-0,  1.5.3-2,  1.5.3-1,  1.5.3-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

Required By:

• phylophlan

• pipelign

• panacota

• gtotree

• gubbins

• funannotate

• orthofinder

• read2tree

• phame

• wgdi

• nullarbor

• lotus2

• augur

• genomics-data-index

• ufcg

• pantools

• anvio

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install iqtree

and update with:

conda update iqtree

or use the docker container:

docker pull quay.io/biocontainers/iqtree:<tag>

(see iqtree/tags for valid values for <tag>)

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