recipe is6110

Tool to find IS6110 insertions in M. tuberculosis NGS data

Homepage:

https://github.com/jodyphelan/is6110

License:

MIT

Recipe:

/is6110/meta.yaml

package is6110

versions:

0.2.0-0

depends bwa:

depends pysam:

depends python:

>=3.10

depends samtools:

>=1.12

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install is6110

and update with::

   mamba update is6110

To create a new environment, run:

mamba create --name myenvname is6110

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/is6110:<tag>

(see `is6110/tags`_ for valid values for ``<tag>``)

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