recipe isafe

A program for identifying a favored mutation in positive selective sweep.

Homepage:

https://github.com/alek0991/iSAFE

License:

BSD / BSD-3-Clause

Recipe:

/isafe/meta.yaml

Links:

biotools: isafe, doi: 10.1038/nmeth.4606

A program for identifying a favored mutation in positive selective sweep. It enables researchers to accurately pinpoint the favored mutation in a large region (∼5 Mbp) by using a statistic derived solely from population genetics signals.

package isafe

(downloads) docker_isafe

versions:

1.1.1-0,  1.1.0-0,  1.0.7-0

depends bcftools:

>=1.2

depends numpy:

>=1.9.0

depends pandas:

>=0.18.0

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isafe

and update with::

   mamba update isafe

To create a new environment, run:

mamba create --name myenvname isafe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isafe:<tag>

(see `isafe/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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