recipe islandpath

IslandPath-DIMOB is a standalone software to predict genomic islands in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.

Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of medical or environmental interest.

Homepage

http://www.pathogenomics.sfu.ca/islandpath/

License

GNU General Public License v3.0

Recipe

/islandpath/meta.yaml

package islandpath

Versions

1.0.6-0,  1.0.5-0,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0

Depends

• hmmer

• perl

• perl-bioperl >=1.7.2

• perl-config-simple

• perl-data-dumper

• perl-log-log4perl

• perl-moose

• perl-moosex-singleton

Required By

• mgca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install islandpath

and update with:

conda update islandpath

or use the docker container:

docker pull quay.io/biocontainers/islandpath:<tag>

(see islandpath/tags for valid values for <tag>)

Download stats

Link to this page

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