recipe isotools

Framework for the analysis of long read transcriptome sequencing data

Homepage:

https://github.com/MatthiasLienhard/isotools

License:

MIT

Recipe:

/isotools/meta.yaml

package isotools

versions:

0.3.4-0

depends biopython:

depends cpat:

>=3.0

depends intervaltree:

depends matplotlib-base:

depends numpy:

depends pandas:

depends psutil:

~=6.0

depends pyhmmer:

depends pysam:

depends python:

>=3.6

depends requests:

depends scikit-learn:

depends scipy:

depends seaborn:

depends statsmodels:

depends tqdm:

depends umap-learn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isotools

and update with::

   mamba update isotools

To create a new environment, run:

mamba create --name myenvname isotools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isotools:<tag>

(see `isotools/tags`_ for valid values for ``<tag>``)

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