recipe itsxpress

ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files

Homepage

http://github.com/usda-ars-gbru/itsxpress

License

PUBLIC-DOMAIN / CC0 1.0

Recipe

/itsxpress/meta.yaml

Links

biotools: ITSxpress, doi: 10.5281/zenodo.1304349, doi: 10.12688/f1000research.15704.1

package itsxpress

(downloads) docker_itsxpress

Versions

1.7.2-0, 1.7.1-0, 1.6.4-0, 1.6.3-0, 1.6.1-1, 1.6.1-0, 1.5.6-0

Depends bbmap

Depends biopython

>=1.60

Depends hmmer

>=3.1

Depends pip

Depends python

>=3.5,<3.6.0a0

Depends vsearch

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install itsxpress

and update with:

conda update itsxpress

or use the docker container:

docker pull quay.io/biocontainers/itsxpress:<tag>

(see itsxpress/tags for valid values for <tag>)