recipe jacusa2

JACUSA2 is a framework for accurate variant assessment, detecting SNVs and arrest events in NGS data.

Homepage:

https://github.com/dieterich-lab/JACUSA2

License:

GPL-3.0-or-later

Recipe:

/jacusa2/meta.yaml

package jacusa2

(downloads) docker_jacusa2

versions:

2.0.4-0

depends openjdk:

>=8,<9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jacusa2

and update with::

   mamba update jacusa2

To create a new environment, run:

mamba create --name myenvname jacusa2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jacusa2:<tag>

(see `jacusa2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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