- recipe jass
Computation of joint statistics over sets of GWAS results
- Homepage:
- License:
MIT / MIT
- Recipe:
- package jass¶
- Versions:
2.3-0,2.2-0,2.0-0,1.0.1-0- Depends:
on aiohttp
on aiosignal
on amqp
on anyio
on apispec
on async-timeout
on attrs
on billiard
on blinker
on blosc
on celery
on certifi
on charset-normalizer
on click
on click-didyoumean
on click-plugins
on click-repl
on contourpy
on cycler
on exceptiongroup
on fastapi
on flask
on flask-cors
on flask-smorest
on fonttools
on frozenlist
on h11
on httpcore
on httptools
on httpx
on idna
on importlib-metadata
on itsdangerous
on jinja2
on kiwisolver
on kombu
on markupsafe
on marshmallow
on matplotlib-base
on msgpack-python
on multidict
on ndindex
on numexpr
on numpy
on packaging
on pandas
on pillow
on prompt-toolkit
on py-cpuinfo
on pydantic
<2.0on pyparsing
on python
>=3.10on python-dateutil
on python-dotenv
on pytz
on pyyaml
on requests
on scipy
on seaborn
on six
on sniffio
on starlette
on tables
on typing_extensions
on tzdata
on urllib3
on uvicorn
on uvloop
on vine
on watchfiles
on wcwidth
on webargs
on websockets
on werkzeug
on yarl
on zipp
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install jass
to add into an existing workspace instead, run:
pixi add jass
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install jass
Alternatively, to install into a new environment, run:
conda create -n envname jass
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/jass:<tag>
(see jass/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/jass/README.html)
