recipe kallisto

Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Homepage:

http://pachterlab.github.io/kallisto

License:

BSD_2_Clause

Recipe:

/kallisto/meta.yaml

Links:

biotools: kallisto, doi: 10.1038/nbt.3519

package kallisto

Versions:

0.48.0-2,  0.48.0-1,  0.48.0-0,  0.46.2-2,  0.46.2-1,  0.46.2-0,  0.46.1-0,  0.46.0-1,  0.46.0-0, 

0.48.0-2,  0.48.0-1,  0.48.0-0,  0.46.2-2,  0.46.2-1,  0.46.2-0,  0.46.1-0,  0.46.0-1,  0.46.0-0,  0.45.1-0,  0.45.0-0,  0.44.0-2,  0.44.0-1,  0.43.1-1,  0.43.1-0,  0.43.0-2,  0.43.0-1,  0.42.4-2,  0.42.4-1,  0.42.3-1,  0.42.3-0

Depends:

• hdf5 >=1.12.1,<1.12.2.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• zlib >=1.2.12,<1.3.0a0

Required By:

• arcas-hla

• funannotate

• abeona

• kb-python

• trinity

• ditasic

• how_are_we_stranded_here

• haploconduct

• savage

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kallisto

and update with:

conda update kallisto

or use the docker container:

docker pull quay.io/biocontainers/kallisto:<tag>

(see kallisto/tags for valid values for <tag>)

Download stats

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