recipe kaptive

Reports information about surface polysaccharide loci for Klebsiella and Acinetobacter baumannii genome assemblies

Homepage:

https://github.com/katholt/Kaptive

License:

GPL3

Recipe:

/kaptive/meta.yaml

package kaptive

Versions:

2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.0-0,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-0, 

2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.0-0,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.1-2,  0.5.1-0,  0.3-0,  0.2-0

Depends:

• biopython <1.78

• blast >=2.3.0

• numpy

• python >=3

Required By:

• kleborate

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kaptive

and update with:

conda update kaptive

or use the docker container:

docker pull quay.io/biocontainers/kaptive:<tag>

(see kaptive/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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