recipe kb-python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

Homepage:

https://github.com/pachterlab/kb_python

Documentation:

https://www.kallistobus.tools/

License:

BSD / BSD

Recipe:

/kb-python/meta.yaml

package kb-python

Versions:

0.27.3-1,  0.27.3-0,  0.27.2-0,  0.27.1-0,  0.27.0-0,  0.26.4-0,  0.26.3-0,  0.26.2-0,  0.26.1-0, 

0.27.3-1,  0.27.3-0,  0.27.2-0,  0.27.1-0,  0.27.0-0,  0.26.4-0,  0.26.3-0,  0.26.2-0,  0.26.1-0,  0.26.0-0,  0.25.1-0,  0.25.0-0,  0.24.4-0

Depends:

• anndata >=0.6.22.post1

• bustools >=0.40.0

• h5py >=2.10.0

• jinja2 >2.10.1

• kallisto >=0.46.2

• loompy >=3.0.6

• nbconvert >=5.6.0

• nbformat >=4.4.0

• ngs-tools >=1.5.11

• numpy >=1.17.2

• pandas >=1.0.0

• plotly >=4.5.0

• python >=3.6

• requests >=2.22.0

• scanpy >=1.4.4.post1

• scikit-learn >=0.21.3

• tqdm >=4.39.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kb-python

and update with:

conda update kb-python

or use the docker container:

docker pull quay.io/biocontainers/kb-python:<tag>

(see kb-python/tags for valid values for <tag>)

Download stats

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